![]() ![]() Perhaps this is it? But it still does not allow me to run macros.Ī sample file is not uploading (it’s a TIFF file), but an image of it in png is attached. The modifiers part of the code receives which mouse buttons are being pressed and if the use left-clicks (16) and. The macro will then move those ROIs but not any that are unselected. You can click the first one and then cmd + click (on Mac) to add additional ROIs. If I were to try Image > Color > Stack to RGB, will that be effective? It looks like I’d have to run this for each individual image I am uploading (I have a set of 17), so there must be a setting to change instead? When I select Hyperstack (under view stack with), I am able to select color options. You need to select the ROIs in the ROI Manager that youd like to move. I’m wondering if I might be using the wrong settings in the Bio-Formats Import Options (also attached)?Ī side note: the images are all opening in a gray color, different from their original format. Bio-Formats is available in the Fiji distribution of ImageJ. The Bio-Formats plugin supports some kinds of DICOM files, too. For users - Fiji is easy to install and has an automatic update function, bundles a lot of plugins and offers comprehensive documentation. How to read DICOM files into ImageJ ImageJ has built-in support for reading some kinds of DICOM files. ![]() However, when I try to run any macro (I am running AEC extraction), I am receiving an error (error and debug window are attached). Fiji is an image processing packagea batteries-included distribution of ImageJ2, bundling a lot of plugins which facilitate scientific image analysis. czi files in fiji, this is a 2gb file with approx 700 scenes 2 channels. I updated and am no longer seeing the previous errors (console is clear). Hi all, I’m having some issues opening a number of. Hi thank you for your response! I haven’t used any custom plugins that I’m aware of - just the standard set that come with Fiji download.
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